PubMed Connections (real name pending…) is a project
to analyse the relationships between authors in the
PubMed database in near real-time.

Conda Environment

This project uses a conda environment to manage its
dependencies. Instructions to install conda can be
found in the
conda documentation.

1. Creating the environment

This only has to be done once. This command will
create a new conda environment that can be used
to run the website locally.

conda env create -f environment.yml

2. Activating the environment

This will activate the environment so that you
can run the website with all its dependencies
loaded.

conda activate pubmed-connections

3. Updating the environment

This will update the environment to include any
new dependencies that were added to the
environment.yml file.

conda env update --name pubmed-connections --file environment.yml --prune

GitHub

View Github